Week 7

Agenda for (02/22/2022)

• Lecture

• Lab exercises

• Go over last week’s exercises

• install and run Prokka

• Use GhostKOALA to reconstruct metabolic pathways

• Study guide for the mid-term

Relevant papers to read

Genome streamlining

Giovannoni et al (2005) Science (https://pubmed.ncbi.nlm.nih.gov/16109880/)

Discovery of CPR bacteria

Brown et al (2015) Nature (https://pubmed.ncbi.nlm.nih.gov/26083755/)