Week 5¶
Agenda for (02/09/2022)¶
Lecture (Metagenomics and uncovering the hidden microbial majority)
Lab exercises
Recap job submission on Cerberus
Install tools needed for today on Cerberus
Run Megahit metagenomic assembly on Cerberus
Run metaSPAdes metagenomic assembly on Cerberus
Download data for unicycler assembly
Run unicycler assembly on Cerberus
Run Quast on metaSPAdes and Megahit assemblies on your own after class
Run Metabat2 on your own after class
Run CheckM on your own after class
Run RefineM on your own after class
Answer the questions at the end of the exercises (these will be on the next assignment)