Week 5

Agenda for (02/09/2022)

  • Lecture (Metagenomics and uncovering the hidden microbial majority)

  • Lab exercises

  • Recap job submission on Cerberus

  • Install tools needed for today on Cerberus

  • Run Megahit metagenomic assembly on Cerberus

  • Run metaSPAdes metagenomic assembly on Cerberus

  • Download data for unicycler assembly

  • Run unicycler assembly on Cerberus

  • Run Quast on metaSPAdes and Megahit assemblies on your own after class

  • Run Metabat2 on your own after class

  • Run CheckM on your own after class

  • Run RefineM on your own after class

  • Answer the questions at the end of the exercises (these will be on the next assignment)