Week 10

Agenda for (03/23/2022)

  • Lecture on Microbial Diversity in Various Habitats

  • Lab exercises

  • DADA2 and Phyloseq exercises using a dataset you will download from NCBI SRA

Relevant Papers to Read

DADA2

https://www.nature.com/articles/nmeth.3869

Phyloseq

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061217

MiSeq SOP paper

https://aem.asm.org/content/79/17/5112